Stoney,
Not knowing what that is made from, it is hard to say if you will have structural damage. I bought a $2,000 bottling machine a year ago for filling Cactus Juice bottles. Part of the machine was an inline filter with a clear bottom, similar to what you have but smaller. After just a month or so, it had failed and cracked, allowing my pump to suck air. I ended up taking it out of the system and all is well now. I suspect you will find similar results if I had to guess.
If you can get a glass bottom, I would go that route. If you do, be careful! It may be rated for pressure but that does not mean it will handle vacuum! My first round chamber prototype was made with thin wall PVC that was rated to 90 PSI and it imploded the first time I tried it. Also, glass is dangerous in the shop since all it takes is one little accident and you will be cleaning up Juice with glass shards in it! No fun for sure.
Please don't let any of this discourage you. Great thinking outside the box and I hope it works great for you.