MEKP does not normally go bad, but it can be contaminated and it can be polluted...water, other air born chemicals (bleach, detergents, etc.), salts, and other related unintended additives.
That said, I have used a 5 gallon can over the period of a year without issue.
But as far as goopy curing...that is a fairly common issue with poly resins that are not mixed completely with the catalyst.
By your description I would say your intention was good...to create a skin and thus reduce the potential for air bubbles/pockets...but I would have removed the materials/strained them, then add them to the molds, then mix your resin/catalyst, pour, and apply your vacuum if you have one.
I am new on the board but I have been dealing with resin and glass projects since '83.
Goopy curing usually only has one culprit...a breakdown of the catalyzing process. Now that said it could be from poor mixing, old resin (resin will start to crystallize and partially solidify creating grains), compromised resin (salts, water, oil, etc.), and contaminated mixing devices (old sticks, used cups, and other elements that can bring curing resin to the mix).
Best thing to do at this point IMO is to remove the goopy piece, let it set up, and then see what you have to work with.
Did you add any wax to your resin? A small amount, a few drops per quart...fairly close or a bit more than the amount of catalyst...this allows for a seal and is a must in an area with high humidity. Usually bound with a styrene base.
You could use 05-13% styrene to thin your resin and change the viscosity if you are worried about air bubbles/voids...the thinner mix will let the bubbles rise easier.
But usually with a goopy mess...it is better to cut your losses...put it away and come back in a month, it will eventually cure, and then deal with it.
Out of sight out of mind.
PS
Make a small batch of the same resin and MEKP, leave it in the cup and see if it sets up. If it does then it is not your resin.